(EBOOK PDF)Glycoinformatics 1st Edition by Thomas Lütteke 149394195X 9781493941957 full chapters

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Product details:

• ISBN 10:149394195X 

• ISBN 13:9781493941957

• Author:Thomas Lütteke 

 This book provides current glycoinformatics methods and protocols used to support the determination of carbohydrate structures in biological samples as well as carbohydrate structure databases, the interaction of carbohydrates with proteins, and theoretical and experimental methods to study their three-dimensional structure and dynamics. Glycoinformatics explores this recently emerged field, which has come into being in order to address the needs of encoding, storing, and analyzing carbohydrate ‘sequences’ and their taxonomy using computers. Written in the highly successful Methods in Molecular Biology series format, chapters contain the kind of detailed description and key implementation advice to ensure successful results.

Authoritative and timely, Glycoinformatics demonstrates the progress that has been achieved in glycoinformatics, which indicates that it is no longer a niche subject covered by only a few scientists but is truly coming of age.

Glycoinformatics 1st Table of contents:

Book Overview
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Chapter 1
Annotation of Glycomics MS and MS/MS Spectra Using the GlycoWorkbench Software Tool.
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Chapter 2
GlycoBase and autoGU: Resources for Interpreting HPLC-Glycan Data.
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Chapter 3
NMR Chemical Shift Prediction of Glycans: Application of the Computer Program CASPER in Structural Analysis.
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Chapter 4
Handling and conversion of carbohydrate sequence formats and monosaccharide notation.
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Chapter 5
Bacterial, plant, and fungal carbohydrate structure databases: daily usage.
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Chapter 6
Using NMR Data on GLYCOSCIENCES.de.
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Chapter 7
Glycomic Analysis Using KEGG GLYCAN.
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Chapter 8
GlycomeDB.
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Chapter 9
Eukaryotic glycosylation: online methods for site prediction on protein sequences.
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Chapter 10
Analyzing Glycan Structure Synthesis with the Glycan Pathway Predictor (GPP) Tool.
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Chapter 11
Functional network in posttranslational modifications: glyco-net in glycoconjugate data bank.
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Chapter 12
JCGGDB: Japan Consortium for Glycobiology and Glycotechnology Database.
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Chapter 13
Glycan array data management at consortium for functional glycomics.
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Chapter 14
Analyzing Glycan-Binding Patterns with the ProfilePSTMM Tool.
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Chapter 15
Exploring the Specificities of Glycan-Binding Proteins Using Glycan Array Data and the GlycoSearch Software.
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Chapter 16
Statistical Analysis of Amino Acids in the Vicinity of Carbohydrate Residues Performed by GlyVicinity.
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Chapter 17
Tools to Assist Determination and Validation of Carbohydrate 3D Structure Data.
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Chapter 18
Glyco3D: A Portal for Structural Glycosciences.
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Chapter 19
Solution conformation of carbohydrates: a view by using NMR assisted by modeling.
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Chapter 20
Informing saccharide structural NMR studies with density functional theory calculations.
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Chapter 21
Energy maps for glycosidic linkage conformations.
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Chapter 22
Conformational analysis of oligosaccharides and polysaccharides using molecular dynamics simulations.
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Chapter 23
Molecular Dynamics Simulations of Membrane- and Protein-Bound Glycolipids Using GLYCAM.
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Chapter 24
Lipopolysaccharide membrane building and simulation.
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Chapter 25
Molecular Dynamics Simulations of Glycoproteins Using CHARMM.
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Chapter 26
Calculating binding free energies for protein-carbohydrate complexes.
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Chapter 27
Scoring Functions for AutoDock.
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Chapter 28
Structures of Glycans Bound to Receptors from Saturation Transfer Difference (STD) NMR Spectroscopy: Quantitative Analysis by using CORCEMA-ST
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Chapter 29
QM/MM Methods for Studying Enzymatic Reactions of Glycosyltransferases.

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