Large scale Genome Sequence Processing 1st Edition by Masahiro Kasahara,Shinichi Morishita ISBN 1860946356 9781860946356

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Product details:

ISBN 10: 1860946356

ISBN 13: 9781860946356 

Author: Masahiro Kasahara, Shinichi Morishita

Efficient computer programs have made it possible to elucidate and analyze large-scale genomic sequences. Fundamental tasks, such as the assembly of numerous whole-genome shotgun fragments, the alignment of complementary DNA sequences with a long genome, and the design of gene-specific primers or oligomers, require efficient algorithms and state-of-the-art implementation techniques. This textbook emphasizes basic software implementation techniques for processing large-scale genome sequences and provides executable sample programs.

Table of contents:

1. Simple String Search

2. Sorting

3. Lookup Tables

4. Suffix Arrays

5. Space-Efficient String Search

6. Approximate String Search

7. Seeded Alignments

8. Whole Genome Shotgun Sequencing

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Tags: Masahiro Kasahara, Shinichi Morishita, Large-scale, Genome Sequence, Processing